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1

Proximity ligation assays for sensitive and specific protein analyses

Sigrun M. Gustafsdottir, Edith Schallmeiner, Simon Fredriksson, Mats Gullberg, Ola Söderberg, Malin Jarvius, Jonas Jarvius, Mathias Howell, Ulf Landegren

Journal:

Analytical Biochemistry

Year:

2005

Language:

english

File:

PDF, 437 KB

english, 2005

2

Analysis of Genes, Transcripts, and Proteins via DNA Ligation

Conze, Tim, Shetye, Alysha, Tanaka, Yuki, Gu, Jijuan, Larsson, Chatarina, Göransson, Jenny, Tavoosidana, Gholamreza, Söderberg, Ola, Nilsson, Mats, Landegren, Ulf

Journal:

Annual Review of Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 852 KB

english, 2009

3

Influence of rigid and non-rigid variation simulations when assessing perceived quality of split-lines

Wickman, Casper, Wagersten, Ola, Forslund, Karin, Söderberg, Rikard

Journal:

Journal of Engineering Design

Year:

2014

Language:

english

File:

PDF, 1.24 MB

english, 2014

4

Clinical and immunological characteristics of Autoimmune Addison's disease: a nationwide Swedish multicenter study.

Dalin, Frida, Nordling Eriksson, Gabriel, Dahlqvist, Per, Hallgren, Åsa, Wahlberg, Jeanette, Ekwall, Olov, Söderberg, Stefan, Rönnelid, Johan, Olcén, Per, Winqvist, Ola, Catrina, Sergiu-Bogdan, Kristr

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2016

Language:

english

File:

PDF, 1.30 MB

english, 2016

5

Insufficient antibody validation challenges oestrogen receptor beta research

Andersson, Sandra, Sundberg, Mårten, Pristovsek, Nusa, Ibrahim, Ahmed, Jonsson, Philip, Katona, Borbala, Clausson, Carl-Magnus, Zieba, Agata, Ramström, Margareta, Söderberg, Ola, Williams, Cecilia, As

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.21 MB

english, 2017

6

Padlock and proximity probes for in situ and array-based analyses: tools for the post-genomic era

Ulf Landegren, Fredrik Dahl, Mats Nilsson, Simon Fredriksson, Johan Banér, Mats Gullberg, Jonas Jarvius, Sigrun Gustafsdottir, Ola Söderberg, Olle Ericsson, Johan Stenberg, Edith Schallmeiner

Journal:

Comparative and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 144 KB

english, 2003

7

Flow cytometric in situ proximity ligation analyses of protein interactions and post-translational modification of the epidermal growth factor receptor family

Karl-Johan Leuchowius, Irene Weibrecht, Ulf Landegren, Lars Gedda, Ola Söderberg

Journal:

Cytometry Part A

Year:

2009

Language:

english

File:

PDF, 725 KB

english, 2009

8

Automated classification of multicolored rolling circle products in dual-channel wide-field fluorescence microscopy

Milan Gavrilovic, Irene Weibrecht, Tim Conze, Ola Söderberg, Carolina Wählby

Journal:

Cytometry Part A

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

9

Prognostic but not predictive role of platelet-derived growth factor receptors in patients with recurrent glioblastoma

Janna Paulsson, Maja Bradic Lindh, Malin Jarvius, Marjut Puputti, Monica Nistér, Nina N. Nupponen, Werner Paulus, Ola Söderberg, Gregor Dresemann, Andreas von Deimling, Heikki Joensuu, Arne Östman, Ma

Journal:

International Journal of Cancer

Year:

2011

Language:

english

File:

PDF, 322 KB

english, 2011

10

Molecular tools for a molecular medicine: analyzing genes, transcripts and proteins using padlock and proximity probes

Ulf Landegren, Edith Schallmeiner, Mats Nilsson, Simon Fredriksson, Johan Banér, Mats Gullberg, Jonas Jarvius, Sigrun Gustafsdottir, Fredrik Dahl, Ola Söderberg, Olle Ericsson, Johan Stenberg

Journal:

Journal of Molecular Recognition

Year:

2004

Language:

english

File:

PDF, 103 KB

english, 2004

11

Ligation-based molecular tools for lab-on-a-chip devices

Jonas Melin, Jonas Jarvius, Chatarina Larsson, Ola Söderberg, Ulf Landegren, Mats Nilsson

Journal:

New Biotechnology

Year:

2008

Language:

english

File:

PDF, 1.36 MB

english, 2008

12

Differentiation-associated redox-regulation in human B cell lines from stem cell/pro-B to plasma cell

Joacim Nilsson, Ola Söderberg, Kenneth Nilsson, Anders Rosén

Journal:

Immunology Letters

Year:

2004

Language:

english

File:

PDF, 109 KB

english, 2004

13

Elevated levels of soluble CD44 are associated with advanced disease and in vitro proliferation of neoplastic lymphocytes in B-cell chronic lymphocytic leukaemia

Wolfgang Eisterer, Oliver Bechter, Ola Söderberg, Kenneth Nilsson, Maria Terol, Richard Greil, Josef Thaler, Manfred Herold, Lothar Finke, Ursula Günthert, Emilio Montserrat, Reinhard Stauder

Journal:

Leukemia Research

Year:

2004

Language:

english

File:

PDF, 159 KB

english, 2004

14

The effects on growth and survival of IL-6 can be dissociated in the U-266-1970/U-266-1984 and HL407E/HL407L human multiple myeloma cell lines

Helena Spets, Helena Jernberg-Wiklund, Clara Sambade, Ola Söderberg, Kenneth Nilsson

Journal:

British Journal of Haematology

Year:

1997

Language:

english

File:

PDF, 1.69 MB

english, 1997

15

Growth and survival of B-chronic lymphocytic leukaemia cells

Journal:

Medical Oncology

Year:

1998

Language:

english

File:

PDF, 791 KB

english, 1998

16

VEGF receptor 2/-3 heterodimers detected in situ by proximity ligation on angiogenic sprouts

Nilsson, Ingrid, Bahram, Fuad, Li, Xiujuan, Gualandi, Laura, Koch, Sina, Jarvius, Malin, Söderberg, Ola, Anisimov, Andrey, Kholová, Ivana, Pytowski, Bronislaw

Journal:

The EMBO Journal

Year:

2010

Language:

english

File:

PDF, 1.83 MB

english, 2010

17

c-Myc associates with ribosomal DNA and activates RNA polymerase I transcription

Arabi, Azadeh, Wu, Siqin, Ridderstråle, Karin, Bierhoff, Holger, Shiue, Chiounan, Fatyol, Karoly, Fahlén, Sara, Hydbring, Per, Söderberg, Ola, Grummt, Ingrid

Journal:

Nature Cell Biology

Year:

2005

Language:

english

File:

PDF, 609 KB

english, 2005

18

In situ detection and genotyping of individual mRNA molecules

Larsson, Chatarina, Grundberg, Ida, Söderberg, Ola, Nilsson, Mats

Journal:

Year:

2010

Language:

english

File:

PDF, 741 KB

english, 2010

19

Direct observation of individual endogenous protein complexes in situ by proximity ligation

Söderberg, Ola, Gullberg, Mats, Jarvius, Malin, Ridderstråle, Karin, Leuchowius, Karl-Johan, Jarvius, Jonas, Wester, Kenneth, Hydbring, Per, Bahram, Fuad, Larsson, Lars-Gunnar

Journal:

Year:

2006

Language:

english

File:

PDF, 380 KB

english, 2006

20

U-2973, a novel B-cell line established from a patient with a mature B-cell leukemia displaying concurrent t(14;18) and MYC translocation to a non-IG gene partner

Hans Boström, Karl-Johan Leuchowius, Helene Hallböök, Ann Nordgren, Ingrid Thörn, Mia Thorselius, Richard Rosenquist, Ola Söderberg, Christer Sundström

Journal:

European Journal of Haematology

Year:

2008

Language:

english

File:

PDF, 1.03 MB

english, 2008

21

Autoimmune diseases, asthma and risk of haematological malignancies: A nationwide case-control study in Sweden

Karin C. Söderberg, Fredrik Jonsson, Ola Winqvist, Lars Hagmar, Maria Feychting

Journal:

European Journal of Cancer

Year:

2006

Language:

english

File:

PDF, 149 KB

english, 2006

22

Characterizing proteins and their interactions in cells and tissues using the in situ proximity ligation assay

Ola Söderberg, Karl-Johan Leuchowius, Mats Gullberg, Malin Jarvius, Irene Weibrecht, Lars-Gunnar Larsson, Ulf Landegren

Journal:

Year:

2008

Language:

english

File:

PDF, 453 KB

english, 2008

23

Polymorphism in the P2X7 receptor gene and survival in chronic lymphocytic leukaemia

Ulf Thunberg, Gerard Tobin, Anna Johnson, Ola Söderberg, Leonid Padyukov, Magnus Hultdin, Lars Klareskog, Gunilla Enblad, Christer Sundström, Göran Roos, Richard Rosenquist

Journal:

Year:

2002

Language:

english

File:

PDF, 101 KB

english, 2002

24

The F-Box Protein Skp2 Participates in c-Myc Proteosomal Degradation and Acts as a Cofactor for c-Myc-Regulated Transcription

Natalie von der Lehr, Sara Johansson, Siqin Wu, Fuad Bahram, Alina Castell, Cihan Cetinkaya, Per Hydbring, Ingrid Weidung, Keiko Nakayama, Keiichi I Nakayama, Ola Söderberg, Tom K Kerppola, Lars-Gunna

Journal:

Year:

2003

Language:

english

File:

PDF, 716 KB

english, 2003

25

Platelet-Derived Growth Factor Receptor Expression and Activation in Choroid Plexus Tumors

Björn Koos, Janna Paulsson, Malin Jarvius, Betzabe Chavez Sanchez, Brigitte Wrede, Sonja Mertsch, Astrid Jeibmann, Anne Kruse, Ove Peters, Johannes E.A. Wolff, Hans-Joachim Galla, Ola Söderberg, Werne

Journal:

The American Journal of Pathology

Year:

2009

Language:

english

File:

PDF, 743 KB

english, 2009

26

Increasing the dynamic range of in situ PLA

Clausson, Carl-Magnus, Allalou, Amin, Weibrecht, Irene, Mahmoudi, Salah, Farnebo, Marianne, Landegren, Ulf, Wählby, Carolina, Söderberg, Ola

Journal:

Year:

2011

Language:

english

File:

PDF, 360 KB

english, 2011

27

The importance of E-cadherin binding partners to evaluate the pathogenicity of E-cadherin missense mutations associated to HDGC

Figueiredo, Joana, Söderberg, Ola, Simões-Correia, Joana, Grannas, Karin, Suriano, Gianpaolo, Seruca, Raquel

Journal:

European Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 1.57 MB

english, 2013

28

Protein expression and cellular localization in two prognostic subgroups of diffuse large B-cell lymphoma: Higher expression of ZAP70 and PKC-β II in the non-germinal center group and poor survival in patients deficient in nuclear PTEN

Fridberg, Marie, Servin, Anna, Anagnostaki, Lola, Linderoth, Johan, Berglund, Mattias, Söderberg, Ola, Enblad, Gunilla, Rosén, Anders, Mustelin, Tomas, Jerkeman, Mats, Persson, Jenny L., Wingren, Anet

Journal:

Leukemia and Lymphoma

Year:

2007

Language:

english

File:

PDF, 1.02 MB

english, 2007

29

P-cadherin functional role is dependent on E-cadherin cellular context: a proof of concept using the breast cancer model

Ribeiro, Ana Sofia, Sousa, Bárbara, Carreto, Laura, Mendes, Nuno, Nobre, Ana Rita, Ricardo, Sara, Albergaria, André, Cameselle-Teijeiro, Jorge F, Gerhard, Rene, Söderberg, Ola, Seruca, Raquel, Santos,

Journal:

The Journal of Pathology

Year:

2013

Language:

english

File:

PDF, 4.76 MB

english, 2013

30

Methods for analysis of the cancer microenvironment and their potential for disease prediction, monitoring and personalized treatments

Carl-Magnus Clausson, Ida Grundberg, Irene Weibrecht, Mats Nilsson, Ola Söderberg

Journal:

The EPMA Journal

Year:

2012

Language:

english

File:

PDF, 1.93 MB

english, 2012

31

P2-106: Proximity ligation-based detection of biomarkers of protein folding disorders

Masood Kamali-Moghaddam, Hillevi Englund, Edith Schallmeiner, Frida Ekholm Pettersson, Ola Söderberg, Dag Sehlin, Anna Lord, Lars Nilsson, Lars Lannfelt, Ulf Landegren

Journal:

Alzheimer's & Dementia

Year:

2006

Language:

english

File:

PDF, 56 KB

english, 2006

32

P1-377: Sensitive detection of biomarkers of protein folding disorders: Proximity ligation-based detection of protein oligomers

Masood Kamali-M, Hillevi Englund, Edith Schallmeiner, Frida Ekholm Pettersson, Spyros Darmanis, Ola Söderberg, Dag Sehlin, Anna Lord, Lars Nilsson, Lars Lannfelt, Ulf Landegren

Journal:

Alzheimer's & Dementia

Year:

2008

Language:

english

File:

PDF, 54 KB

english, 2008

33

The performance of a global and mesoscale model over the central Arctic Ocean during late summer

Birch, C. E., Brooks, I. M., Tjernström, M., Milton, S. F., Earnshaw, P., Söderberg, S., Persson, P. Ola G.

Journal:

Journal of Geophysical Research

Year:

2009

Language:

english

File:

PDF, 1.33 MB

english, 2009

34

Molecular tools for companion diagnostics

Agata Zieba, Karin Grannas, Ola Söderberg, Mats Gullberg, Mats Nilsson, Ulf Landegren

Journal:

New Biotechnology

Year:

2012

Language:

english

File:

PDF, 848 KB

english, 2012

35

Visualising individual sequence-specific protein–DNA interactions in situ

Irene Weibrecht, Milan Gavrilovic, Lena Lindbom, Ulf Landegren, Carolina Wählby, Ola Söderberg

Journal:

New Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

36

Identification of new cancer biomarkers based on aberrant mucin glycoforms by in situ proximity ligation

Rita Pinto, Ana S. Carvalho, Tim Conze, Ana Magalhães, Gianfranco Picco, Joy M. Burchell, Joyce Taylor-Papadimitriou, Celso A. Reis, Raquel Almeida, Ulla Mandel, Henrik Clausen, Ola Söderberg, Leonor

Journal:

Journal of Cellular and Molecular Medicine

Year:

2012

Language:

english

File:

PDF, 775 KB

english, 2012

37

In situ detection of individual mRNA molecules and protein complexes or post-translational modifications using padlock probes combined with the in situ proximity ligation assay

Weibrecht, Irene, Lundin, Elin, Kiflemariam, Sara, Mignardi, Marco, Grundberg, Ida, Larsson, Chatarina, Koos, Björn, Nilsson, Mats, Söderberg, Ola

Journal:

Bioentrepreneur

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

38

Proximity ligation assays: a recent addition to the proteomics toolbox

Weibrecht, Irene, Leuchowius, Karl-Johan, Clausson, Carl-Magnus, Conze, Tim, Jarvius, Malin, Howell, W Mathias, Kamali-Moghaddam, Masood, Söderberg, Ola

Journal:

Expert Review of Proteomics

Year:

2010

Language:

english

File:

PDF, 344 KB

english, 2010

39

Protein tag-mediated conjugation of oligonucleotides to recombinant affinity binders for proximity ligation

Gu, Gucci Jijuan, Friedman, Mikaela, Jost, Christian, Johnsson, Kai, Kamali-Moghaddam, Masood, Plückthun, Andreas, Landegren, Ulf, Söderberg, Ola

Journal:

New Biotechnology

Year:

2013

Language:

english

File:

PDF, 759 KB

english, 2013

40

A Framework for Producibility and Design for Manufacturing Requirements in a System Engineering Context

Vallhagen, Johan, Isaksson, Ola, Söderberg, Rikard, Wärmefjord, Kristina

Journal:

Year:

2013

Language:

english

File:

PDF, 391 KB

english, 2013

41

Proximity ligation assays; Sensitive molecular tools for proteome analyses in neurodegenerative disorders

Kamali-M., Masood, Wu, Di, Weibrecht, Irene, Gu, Jijuan, Yan, Junhong, Darmanis, Spyros, Söderberg, Ola

Journal:

Alzheimer's & Dementia

Year:

2010

Language:

english

File:

PDF, 44 KB

english, 2010

42

Thermoplastic Microfluidic Platform for Single-Molecule Detection, Cell Culture, and Actuation

Melin, Jonas, Johansson, Henrik, Söderberg, Ola, Nikolajeff, Fredrik, Landegren, Ulf, Nilsson, Mats, Jarvius, Jonas

Journal:

Analytical Chemistry

Year:

2005

Language:

english

File:

PDF, 674 KB

english, 2005

43

V H 3-21 Gene Usage in Chronic Lymphocytic Leukemia – Characterization of a New Subgroup with Distinct Molecular Features and Poor Survival

TOBIN, GERARD, SÖDERBERG, OLA, THUNBERG, ULF, ROSENQUIST, RICHARD

Journal:

Leukemia and Lymphoma

Year:

2004

Language:

english

File:

PDF, 407 KB

english, 2004

44

Towards non-FEA-based deformation methods for evaluating perceived quality of split-lines

Wagersten, Ola, Wickman, Casper, Lindkvist, Lars, Söderberg, Rikard

Journal:

Journal of Engineering Design

Year:

2013

Language:

english

File:

PDF, 503 KB

english, 2013

45

Variational approach for minimizing Lennard-Jones energies

Peterson, Carsten, Sommelius, Ola, Söderberg, Bo

Journal:

Physical Review E

Year:

1996

File:

PDF, 1.07 MB

1996

46

Blocking Technique for Emulating Very Large Polyelectrolytes

Peterson, Carsten, Sommelius, Ola, Söderberg, Bo

Journal:

Physical Review Letters

Year:

1996

Language:

english

File:

PDF, 124 KB

english, 1996

47

Detection of glyco-mucin profiles improves specificity of MUC16 and MUC1 biomarkers in ovarian serous tumours

Ricardo, Sara, Marcos-Silva, Lara, Pereira, Daniela, Pinto, Rita, Almeida, Raquel, Söderberg, Ola, Mandel, Ulla, Clausen, Henrik, Felix, Ana, Lunet, Nuno, David, Leonor

Journal:

Molecular Oncology

Year:

2015

Language:

english

File:

PDF, 2.39 MB

english, 2015

48

Next-Generation Pathology—Surveillance of Tumor Microecology

Koos, Björn, Kamali-Moghaddam, Masood, David, Leonor, Sobrinho-Simões, Manuel, Dimberg, Anna, Nilsson, Mats, Wählby, Carolina, Söderberg, Ola

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 769 KB

english, 2015

49

Crosstalk between Hippo and TGFβ: Subcellular Localization of YAP/TAZ/Smad Complexes

Grannas, Karin, Arngården, Linda, Lönn, Peter, Mazurkiewicz, Magdalena, Blokzijl, Andries, Zieba, Agata, Söderberg, Ola

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 2.54 MB

english, 2015

50

WRAP53 Is Essential for Cajal Body Formation and for Targeting the Survival of Motor Neuron Complex to Cajal Bodies

Mahmoudi, Salah, Henriksson, Sofia, Weibrecht, Irene, Smith, Stephen, Söderberg, Ola, Strömblad, Staffan, Wiman, Klas G., Farnebo, Marianne, Misteli, Tom

Journal:

Year:

2010

Language:

english

File:

PDF, 2.32 MB

english, 2010

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